Bundled along with a free game, .hack//Versus, on the .hack//Sekai no Mukou ni Blu-ray disc, is a special called "The Thanatos Report". This special connects the events of the game with the events of the movie and "reveal the last truth". The protagonist of the special is David; a character who also appears in the main movie. The special takes place in both 2024 (the year in which the movie takes place) and 2025 (the year in which the game .hack//Versus takes place).

Seara loved Shuhei ever since she was a little girl. Although, Shuhei was three years older and much bigger than her. He told her to come back when she was older and more grown-up. A few years later, Seara grew to look like a high school student and managed to riggle her way into Shuhei's home. She will now attempt to win his heart, although there might be some obstacles in her path.

1. Final Flight of the Osiris The crew of the Osiris discover an army preparing to invade Zion. While one crew member races inside the Matrix to get the message to Zion, the others try desperately to buy her enough time while fighting off an onslaught of Sentinels they can't possibly defeat. 2-3. The Second Renaissance Part 1 and 2 Humans have created the ultimate AI, which is just as smart as they are. But complications arise when these robots and the humans try to exist peacefully, and eventually all-out war breaks out. The humans ultimately lose the war, and become trapped in the Matrix as seen in the live-action films. 4. Kid's Story A young man discovers that his world isn't real, that it's a computer-generated fantasy land created by robots using humans for energy. He escapes with the help of the hacker Neo. Based on the Matrix trilogy. 5. Program Cis and Duo engage in battle in a virtual recreation of Feudal Japan. 6. World Record While running the fastest race in his life, a champion track star breaks free of his computer-generated world for a small period of time. When he goes back to the real world, he has no memories and is placed in a nursing home. Based on the Matrix trilogy. 7. Beyond While looking for her lost pet, a young woman meets up with some kids in Tokyo to play in a "haunted house," which is really a glitch in their computer world. Based on the Matrix trilogy. 8. Detective Story A detective named Ash is called upon by a mysterious organization to hunt down the notorious hacker Trinity. 9. Matriculated A group of scientists capture a robot and place it in a surreal fantasy world. When the robot's friends come in and kill most of the scientists; however, the robot and the last scientist remaining face isolation in the computer-generated world. Based on the Matrix trilogy.

The Animatrix is a collection of several animated short films, detailing the backstory of the "Matrix" universe, and the original war between man and machines which led to the creation of the Matrix.